Ecology of Alpine Macrofungi - Combining Historical with Recent Data.
Identifieur interne : 000A21 ( Main/Exploration ); précédent : 000A20; suivant : 000A22Ecology of Alpine Macrofungi - Combining Historical with Recent Data.
Auteurs : Ivano Brunner [Suisse] ; Beat Frey [Suisse] ; Martin Hartmann [Suisse] ; Stephan Zimmermann [Suisse] ; Frank Graf [Suisse] ; Laura M. Suz [Royaume-Uni] ; Tuula Niskanen [Royaume-Uni] ; Martin I. Bidartondo [Royaume-Uni] ; Beatrice Senn-Irlet [Suisse]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2017.
Abstract
Historical datasets of living communities are important because they can be used to document creeping shifts in species compositions. Such a historical data set exists for alpine fungi. From 1941 to 1953, the Swiss geologist Jules Favre visited yearly the region of the Swiss National Park and recorded the occurring fruiting bodies of fungi >1 mm (so-called "macrofungi") in the alpine zone. Favre can be regarded as one of the pioneers of alpine fungal ecology not least because he noted location, elevation, geology, and associated plants during his numerous excursions. However, some relevant information is only available in his unpublished field-book. Overall, Favre listed 204 fungal species in 26 sampling sites, with 46 species being previously unknown. The analysis of his data revealed that the macrofungi recorded belong to two major ecological groups, either they are symbiotrophs and live in ectomycorrhizal associations with alpine plant hosts, or they are saprotrophs and decompose plant litter and soil organic matter. The most frequent fungi were members of Inocybe and Cortinarius, which form ectomycorrhizas with Dryas octopetala or the dwarf alpine Salix species. The scope of the present study was to combine Favre's historical dataset with more recent data, either with the "SwissFungi" database or with data from major studies of the French and German Alps, and with the data from novel high-throughput DNA sequencing techniques of soils from the Swiss Alps. Results of the latter application revealed, that problems associated with these new techniques are manifold and species determination remains often unclear. At this point, the fungal taxa collected by Favre and deposited as exsiccata at the "Conservatoire et Jardin Botaniques de la Ville de Genève" could be used as a reference sequence dataset for alpine fungal studies. In conclusion, it can be postulated that new improved databases are urgently necessary for the near future, particularly, with regard to investigating fungal communities from alpine regions using new techniques.
DOI: 10.3389/fmicb.2017.02066
PubMed: 29123508
PubMed Central: PMC5662630
Affiliations:
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Combining Historical with Recent Data.</title><author><name sortKey="Brunner, Ivano" sort="Brunner, Ivano" uniqKey="Brunner I" first="Ivano" last="Brunner">Ivano Brunner</name><affiliation wicri:level="1"><nlm:affiliation>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf</wicri:regionArea><wicri:noRegion>Birmensdorf</wicri:noRegion></affiliation></author><author><name sortKey="Frey, Beat" sort="Frey, Beat" uniqKey="Frey B" first="Beat" last="Frey">Beat Frey</name><affiliation wicri:level="1"><nlm:affiliation>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf</wicri:regionArea><wicri:noRegion>Birmensdorf</wicri:noRegion></affiliation></author><author><name sortKey="Hartmann, Martin" sort="Hartmann, Martin" uniqKey="Hartmann M" first="Martin" last="Hartmann">Martin Hartmann</name><affiliation wicri:level="1"><nlm:affiliation>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf</wicri:regionArea><wicri:noRegion>Birmensdorf</wicri:noRegion></affiliation></author><author><name sortKey="Zimmermann, Stephan" sort="Zimmermann, Stephan" uniqKey="Zimmermann S" first="Stephan" last="Zimmermann">Stephan Zimmermann</name><affiliation wicri:level="1"><nlm:affiliation>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf</wicri:regionArea><wicri:noRegion>Birmensdorf</wicri:noRegion></affiliation></author><author><name sortKey="Graf, Frank" sort="Graf, Frank" uniqKey="Graf F" first="Frank" last="Graf">Frank Graf</name><affiliation wicri:level="1"><nlm:affiliation>Community Ecology, WSL Institute for Snow and Avalanche Research SLF, Davos Dorf, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Community Ecology, WSL Institute for Snow and Avalanche Research SLF, Davos Dorf</wicri:regionArea><wicri:noRegion>Davos Dorf</wicri:noRegion></affiliation></author><author><name sortKey="Suz, Laura M" sort="Suz, Laura M" uniqKey="Suz L" first="Laura M" last="Suz">Laura M. Suz</name><affiliation wicri:level="1"><nlm:affiliation>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond</wicri:regionArea><wicri:noRegion>Richmond</wicri:noRegion></affiliation></author><author><name sortKey="Niskanen, Tuula" sort="Niskanen, Tuula" uniqKey="Niskanen T" first="Tuula" last="Niskanen">Tuula Niskanen</name><affiliation wicri:level="1"><nlm:affiliation>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond</wicri:regionArea><wicri:noRegion>Richmond</wicri:noRegion></affiliation></author><author><name sortKey="Bidartondo, Martin I" sort="Bidartondo, Martin I" uniqKey="Bidartondo M" first="Martin I" last="Bidartondo">Martin I. Bidartondo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond</wicri:regionArea><wicri:noRegion>Richmond</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:affiliation>Department of Life Sciences, Imperial College London, London, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Life Sciences, Imperial College London, London</wicri:regionArea><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Senn Irlet, Beatrice" sort="Senn Irlet, Beatrice" uniqKey="Senn Irlet B" first="Beatrice" last="Senn-Irlet">Beatrice Senn-Irlet</name><affiliation wicri:level="1"><nlm:affiliation>Biodiversity and Conservation Biology, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Biodiversity and Conservation Biology, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf</wicri:regionArea><wicri:noRegion>Birmensdorf</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Historical datasets of living communities are important because they can be used to document creeping shifts in species compositions. Such a historical data set exists for alpine fungi. From 1941 to 1953, the Swiss geologist Jules Favre visited yearly the region of the Swiss National Park and recorded the occurring fruiting bodies of fungi >1 mm (so-called "macrofungi") in the alpine zone. Favre can be regarded as one of the pioneers of alpine fungal ecology not least because he noted location, elevation, geology, and associated plants during his numerous excursions. However, some relevant information is only available in his unpublished field-book. Overall, Favre listed 204 fungal species in 26 sampling sites, with 46 species being previously unknown. The analysis of his data revealed that the macrofungi recorded belong to two major ecological groups, either they are symbiotrophs and live in ectomycorrhizal associations with alpine plant hosts, or they are saprotrophs and decompose plant litter and soil organic matter. The most frequent fungi were members of <i>Inocybe</i> and <i>Cortinarius</i>, which form ectomycorrhizas with <i>Dryas octopetala</i> or the dwarf alpine <i>Salix</i> species. The scope of the present study was to combine Favre's historical dataset with more recent data, either with the "SwissFungi" database or with data from major studies of the French and German Alps, and with the data from novel high-throughput DNA sequencing techniques of soils from the Swiss Alps. Results of the latter application revealed, that problems associated with these new techniques are manifold and species determination remains often unclear. At this point, the fungal taxa collected by Favre and deposited as exsiccata at the "Conservatoire et Jardin Botaniques de la Ville de Genève" could be used as a reference sequence dataset for alpine fungal studies. In conclusion, it can be postulated that new improved databases are urgently necessary for the near future, particularly, with regard to investigating fungal communities from alpine regions using new techniques.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29123508</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>Ecology of Alpine Macrofungi - Combining Historical with Recent Data.</ArticleTitle><Pagination><MedlinePgn>2066</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2017.02066</ELocationID><Abstract><AbstractText>Historical datasets of living communities are important because they can be used to document creeping shifts in species compositions. Such a historical data set exists for alpine fungi. From 1941 to 1953, the Swiss geologist Jules Favre visited yearly the region of the Swiss National Park and recorded the occurring fruiting bodies of fungi >1 mm (so-called "macrofungi") in the alpine zone. Favre can be regarded as one of the pioneers of alpine fungal ecology not least because he noted location, elevation, geology, and associated plants during his numerous excursions. However, some relevant information is only available in his unpublished field-book. Overall, Favre listed 204 fungal species in 26 sampling sites, with 46 species being previously unknown. The analysis of his data revealed that the macrofungi recorded belong to two major ecological groups, either they are symbiotrophs and live in ectomycorrhizal associations with alpine plant hosts, or they are saprotrophs and decompose plant litter and soil organic matter. The most frequent fungi were members of <i>Inocybe</i> and <i>Cortinarius</i>, which form ectomycorrhizas with <i>Dryas octopetala</i> or the dwarf alpine <i>Salix</i> species. The scope of the present study was to combine Favre's historical dataset with more recent data, either with the "SwissFungi" database or with data from major studies of the French and German Alps, and with the data from novel high-throughput DNA sequencing techniques of soils from the Swiss Alps. Results of the latter application revealed, that problems associated with these new techniques are manifold and species determination remains often unclear. At this point, the fungal taxa collected by Favre and deposited as exsiccata at the "Conservatoire et Jardin Botaniques de la Ville de Genève" could be used as a reference sequence dataset for alpine fungal studies. In conclusion, it can be postulated that new improved databases are urgently necessary for the near future, particularly, with regard to investigating fungal communities from alpine regions using new techniques.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Brunner</LastName><ForeName>Ivano</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Frey</LastName><ForeName>Beat</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hartmann</LastName><ForeName>Martin</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zimmermann</LastName><ForeName>Stephan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Graf</LastName><ForeName>Frank</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Community Ecology, WSL Institute for Snow and Avalanche Research SLF, Davos Dorf, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Suz</LastName><ForeName>Laura M</ForeName><Initials>LM</Initials><AffiliationInfo><Affiliation>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Niskanen</LastName><ForeName>Tuula</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bidartondo</LastName><ForeName>Martin I</ForeName><Initials>MI</Initials><AffiliationInfo><Affiliation>Department of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, United Kingdom.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Life Sciences, Imperial College London, London, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Senn-Irlet</LastName><ForeName>Beatrice</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Biodiversity and Conservation Biology, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>10</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Dryas octopetala</Keyword><Keyword MajorTopicYN="N">Salix herbacea</Keyword><Keyword MajorTopicYN="N">Salix reticulata</Keyword><Keyword MajorTopicYN="N">Salix retusa</Keyword><Keyword MajorTopicYN="N">Salix serpyllifolia</Keyword><Keyword MajorTopicYN="N">Swiss National Park</Keyword><Keyword MajorTopicYN="N">ectomycorrhiza</Keyword><Keyword MajorTopicYN="N">fungal communities</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate 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sort="Brunner, Ivano" uniqKey="Brunner I" first="Ivano" last="Brunner">Ivano Brunner</name></noRegion><name sortKey="Frey, Beat" sort="Frey, Beat" uniqKey="Frey B" first="Beat" last="Frey">Beat Frey</name><name sortKey="Graf, Frank" sort="Graf, Frank" uniqKey="Graf F" first="Frank" last="Graf">Frank Graf</name><name sortKey="Hartmann, Martin" sort="Hartmann, Martin" uniqKey="Hartmann M" first="Martin" last="Hartmann">Martin Hartmann</name><name sortKey="Senn Irlet, Beatrice" sort="Senn Irlet, Beatrice" uniqKey="Senn Irlet B" first="Beatrice" last="Senn-Irlet">Beatrice Senn-Irlet</name><name sortKey="Zimmermann, Stephan" sort="Zimmermann, Stephan" uniqKey="Zimmermann S" first="Stephan" last="Zimmermann">Stephan Zimmermann</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Suz, Laura M" sort="Suz, Laura M" uniqKey="Suz L" first="Laura M" last="Suz">Laura M. Suz</name></noRegion><name sortKey="Bidartondo, Martin I" sort="Bidartondo, Martin I" uniqKey="Bidartondo M" first="Martin I" last="Bidartondo">Martin I. Bidartondo</name><name sortKey="Bidartondo, Martin I" sort="Bidartondo, Martin I" uniqKey="Bidartondo M" first="Martin I" last="Bidartondo">Martin I. Bidartondo</name><name sortKey="Niskanen, Tuula" sort="Niskanen, Tuula" uniqKey="Niskanen T" first="Tuula" last="Niskanen">Tuula Niskanen</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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